PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN28197.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 325aa    MW: 36612.5 Da    PI: 6.253
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN28197.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-172370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT +Ed+ l+++v+ +G g+W+t a   g++Rt+k+c++rw++yl
       KHN28197.1 23 RGPWTVDEDLTLINYVATHGEGRWNTLALSAGLKRTGKSCRLRWLNYL 70
                     89********************************************97 PP

2Myb_DNA-binding50.54.9e-1676119146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T eE++l+++++ ++G++ W++Ia++++ gRt++++k++w++
       KHN28197.1  76 RGNITLEEQLLILELHSRWGNR-WSKIAQYLP-GRTDNEIKNYWRT 119
                      7999******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.071874IPR017930Myb domain
SuperFamilySSF466897.11E-3120117IPR009057Homeodomain-like
SMARTSM007173.4E-142272IPR001005SANT/Myb domain
PfamPF002493.0E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-222477IPR009057Homeodomain-like
CDDcd001676.14E-112570No hitNo description
PROSITE profilePS5129418.37875125IPR017930Myb domain
SMARTSM007172.9E-1475123IPR001005SANT/Myb domain
PfamPF002498.1E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-2278124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009620Biological Processresponse to fungus
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDGKGARSSN TLLSSEDEMD LRRGPWTVDE DLTLINYVAT HGEGRWNTLA LSAGLKRTGK  60
SCRLRWLNYL RPDVRRGNIT LEEQLLILEL HSRWGNRWSK IAQYLPGRTD NEIKNYWRTR  120
VQKHAKQLKC DVNSKQFKDT MRYIWMPRLV ERIQATAAAS ATTTVTATTA TNNAYTYGSN  180
LNNNKFEVHD HKGKMGLTDP SVMNNDLVGS HVTQSYTPEN SSTGASSSDS FGTQVSAISD  240
LTEYYTVTVS GNNNNTNSAD YYQPSQISYS DSCITSPSGL FPQGLDFQSM DPNTPWNMQS  300
GDSSDSFWNV ESMLFLEQQL MNDNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252011724120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00334DAPTransfer from AT3G06490Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0937110.0BT093711.1 Soybean clone JCVI-FLGm-17N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001239915.10.0uncharacterized protein LOC100791349
SwissprotQ9LDE12e-89MY108_ARATH; Transcription factor MYB108
TrEMBLA0A0B2R8U40.0A0A0B2R8U4_GLYSO; Myb-related protein 305
TrEMBLC6T8B50.0C6T8B5_SOYBN; Uncharacterized protein
TrEMBLK7L3H70.0K7L3H7_SOYBN; Uncharacterized protein
STRINGGLYMA07G36430.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06490.11e-85myb domain protein 108
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]